Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015873006.1_cds_XP_016434995.1_31003
CDS Infomation

[gene=LOC107761291] [db_xref=GeneID:107761291] [protein=pentatricopeptide repeat-containing protein At2g21090-like] [protein_id=XP_016434995.1] [location=complement(join(2033..2075,3054..4894))] [gbkey=CDS]
Sequence

ATGCCCACTTCATCTTTACCTTCCAAAGTTCGCAGTTTTGGAGTTAAATCCGTTAATACA
AACAAGAAGCTCAATAATTTATGCTCAGTCCAAAAAATTCTCAATCTCTCTTCTCAAGGC
CATCTTAAACAAGCCTTCCATCACCTTAACATCCTAACTCGCAAAGGCATTCGCTTAGAC
AGTAAAACTCTAGCTTCTCTCATTCAACAGTGTGCCAATTCGAAGTCATATAGAGAAGGA
AAATGGATCCACTTCCATCTCAAAACCACTGGGTGGAAACACCCCACTACTTTTCTTGCC
AATCATTTGATTAACATGTATGGTAAGTGCGGTCGTCATATTGAAGCACGTAACGTGTTT
GATAAAATGACTACGAGAAATTTGTATTCCTGGAATAATATGCTTTCTGGCTATGCTAAG
TCAGGCATGGTAAAGGCTGCTAAAAGGCTGTTTGACAAAATGCCCGAGAAAGATGTTGTT
TCTTGGAATACTATGGTGATTGCTTATGCTCAGGTTGGGTACTTCAACGAGGCTCTCAAG
TTTTATAGAGAATTTAGGAGGTTAGGTATTGGGTTCAATGACTATAGCTTTGCTGGGGTT
ATTACTGCTTGTGTTAAGTCCAGGGATTTTTCTCTCACTGGGCAGGTTCATTCCCAAGTA
CTGGTCGCTGGGTTTTTGTCTAATGTAGTTCTTTCTAGTTCGATTGTTGATGCGTATGCA
AAATGTGGAAAGATGAGCGATGCTAGAAGGTTGTTTGATGCAATGAGAGTAAAAGATGTT
CTTGCTTGGACCACCTTGGTTTCAGGCTATTCAAGGTGTGGCGATATGGTGTCGGCCAGG
GAGCTGTTTGAAGCAATGCCTGAGAAGAATCCTGTTTCTTGGACGACTTTGATTGCTGGT
TATTCCCACAGTGGCATGAGCCTTCAAGCCCTTGAGTTATTTTCAAAGATGATGAAGCTT
CAAGTCCAACCTGATCAGTTTACATTTAGTAGTTGTCTATCTGCTTGTGCTGATATAGCA
TCACTTAAGCATGGTAAGCAAGTACATGCATTCCTGGTGAATGCTGGTTTAAGACCTAAT
GCAATTGTTATGAGTTCTCTCATTGATATGTATTCAAAATGTGGAAATTTGGAAGTTGCA
AAGAGGGTATTTGATACGATGGGCAACAAACATGATGCAGTATTTTGGAACACCATGTTG
TCTGCATTAGCACAACATGGTATGGGTGAAGAGGCAATTGAACAGTTCTTTAGGATGGTG
AAGTTTGGAGTGAAACCAAACAGAATCACTTTTGTCGTCCTTCTCAATGCTTGTAGTCAT
TCAGGGCTAGTGCAAGAAGGTCTTTCCTTTTTCGAGATGATGACTTCTAATTATAATGTT
CCTCCCGATGAAGAACATTATGCATGCATAATTGACCTCTTAGGTAGAGCAGGGCGTTTT
AGTGAAGTGCTAGCTCAGATAAAGAAGATGCCATGTGAACCTGATGATCGTATTTGGAAT
GCCGTACTTGGTGTTTGTAGGATTCATGGAAATGTAGAGTTGGGTAGGATGGCTGCCGAA
CTACTAATAGAGCTGGACCCACAGTCTCCTGCTGCATATTTGCTGTTGTCAAGTATTTAT
GGTGCACTTGGGATGTGGGAAAATGTAGAGAAAGTGAGACAGCTTATGAATGAGAGACAT
GTTAGGAAAGAGCAGGCTGTTAGTTGGTTAGAGATTGAGCAAAAACTGCGTCCGTCTTTT
GGGTGTAGTCAGTCGAATACTTTAGAGAAAGATACACTCTCGATTTTGCAACTTTTAGCT
GATAAGACAGAAGAAGATAATTTATTGCATGACAGTGAAAGTTTTATACATGGTGGGCTT
GATGCTAGAGGTAGCAACCTTTGA

Peptide Sequence

PEP ID

XP_016434995.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Nicotiana tabacum]
Sequence

MPTSSLPSKVRSFGVKSVNTNKKLNNLCSVQKILNLSSQGHLKQAFHHLNILTRKGIRLD
SKTLASLIQQCANSKSYREGKWIHFHLKTTGWKHPTTFLANHLINMYGKCGRHIEARNVF
DKMTTRNLYSWNNMLSGYAKSGMVKAAKRLFDKMPEKDVVSWNTMVIAYAQVGYFNEALK
FYREFRRLGIGFNDYSFAGVITACVKSRDFSLTGQVHSQVLVAGFLSNVVLSSSIVDAYA
KCGKMSDARRLFDAMRVKDVLAWTTLVSGYSRCGDMVSARELFEAMPEKNPVSWTTLIAG
YSHSGMSLQALELFSKMMKLQVQPDQFTFSSCLSACADIASLKHGKQVHAFLVNAGLRPN
AIVMSSLIDMYSKCGNLEVAKRVFDTMGNKHDAVFWNTMLSALAQHGMGEEAIEQFFRMV
KFGVKPNRITFVVLLNACSHSGLVQEGLSFFEMMTSNYNVPPDEEHYACIIDLLGRAGRF
SEVLAQIKKMPCEPDDRIWNAVLGVCRIHGNVELGRMAAELLIELDPQSPAAYLLLSSIY
GALGMWENVEKVRQLMNERHVRKEQAVSWLEIEQKLRPSFGCSQSNTLEKDTLSILQLLA
DKTEEDNLLHDSESFIHGGLDARGSNL

Transcript Sequence

Gene sequence data has not been registered.